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3 projectsNext Generation Sequencing › Assembly

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Assembly

  • lh3/minimap2 on GitHub, opens in a new tab

    2.2Kstars

    Minimap2 is an pairwise aligner for genomic and spliced nucleotide sequences. It can perform the assembly-to-assembly alignment, and works with gzip'd FASTQ, FASTA formats. It also finds overlaps between long-reads.

    COtheractive

  • ablab/spades on GitHub, opens in a new tab

    955stars

    SPAdes (St. Petersburg genome assembler) is an assembly toolkit containing various assembly pipelines and the de-facto standard for prokaryotic genome assemblies.

    C++Otheractive

  • ncbi/SKESA on GitHub, opens in a new tab

    127stars

    SKESA is a de-novo sequence read assembler for microbial genomes. It uses conservative heuristics and is designed to create breaks at repeat regions in the genome. This leads to excellent sequence quality without significantly compromising contiguity.

    C++Otherslowing

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