Scalable toolkit for analyzing single-cell gene expression data, including preprocessing, visualization, clustering, and trajectory inference. [ paper-2018 | web ]
PythonBSD 3-Clause "New" or "Revised" Licenseactive
Bioinformatics Tools
Search all Bioinformatics projects →8 projectsNext Generation Sequencing › Python Modules › Tools
- 50%active
- 13%steady
- 25%slowing
- 12%dormant
Tools
Python wrapper for samtools. [ web ]
CythonMIT Licenseactive
Pythonic access to FASTA files.
PythonOthersteady
Cython + HTSlib == fast VCF parsing; even faster parsing than pyVCF. [ paper-2017 | web ]
CythonMIT Licenseactive
A VCF Parser for Python. [ web ]
PythonOtherslowing
Python wrapper for bedtools. [ paper-2011 | web ]
PythonOtherslowing
Python library for blazing-fast genomic interval operations and genomic file formats I/O on Polars DataFrames [ paper-2025 | [ web ] ]
PythonApache License 2.0active
A port of pyVCF using Cython for speed.
PythonMIT Licensedormant
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