(recommended) - A fluent DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipelines in a portable manner. [ paper-2018 | web ]
GroovyApache License 2.0active
Bioinformatics Workflow Managers
Search all Bioinformatics projects →10 projectsNext Generation Sequencing › Workflow Managers
- 50%active
- 10%slowing
- 40%dormant
Workflow Managers
a specification for describing analysis workflows and tools that are portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance computing (HPC) environments. [ web ]
Common Workflow LanguageApache License 2.0active
Workflow library embedded in the Go programming language, focusing on supporting complex workflow constructs, compiling to a single binary, providing powerful file naming and comprehensive audit reports for every output [ paper-2019 | web ]
GoMIT Licenseslowing
A Workflow Management System geared towards scientific workflows. [ web ]
ScalaBSD 3-Clause "New" or "Revised" Licenseactive
A python-based workflow manager.
PythonApache License 2.0active
A small language for defining pipeline stages and linking them together to make pipelines. [ web ]
GroovyOtheractive
Computation Pipeline library for python widely used in science and bioinformatics. [ paper-2010 | web ]
PythonMIT Licensedormant
A cross-system scripting language for working with big data pipelines in computer systems of different sizes and capabilities. [ paper-2014 | web ]
Shelldormant
Hadoop Oozie-based workflow system focused on genomics data analysis in cloud environments. [ paper-2010 | web ]
JavaGNU General Public License v3.0dormant
Workflow standard developed by the Broad. [ web ]
JavaBSD 3-Clause "New" or "Revised" Licensedormantarchived
Back to Awesome BioinformaticsSearch Awesome Bioinformatics →